Equine Coat Color Genetics

Lesson Eight

 

Patterns of White

Part Two -  Overo”

 

            In the last lesson we discussed the tobiano coat pattern and genetics.  In this lesson we will discuss the other coat patterns.  As mentioned last time, the Paint and Pinto registries divide patterns into tobiano and overo (or “tovero” for horses with both).  However, although tobiano is just one simple gene, the “overo” category includes “everything else” which is now known to be dozens of different genes.

            The registries have lists of the “differences between tobiano and overo”, such as: 

·         Tobiano looks like a “white horse with dark spots” while overo looks like a “dark horse with white spots”.

·         Tobiano has white legs, overo has dark legs.

·         The white crosses the back on tobiano, and doesn’t on overo. 

·         The white spots are vertically oriented on tobiano, and horizontally on overo.

·         Tobiano spots are smooth-edged and rounded, while overo spots are jagged or lacey.

·         Tobiano tails are often two-toned, while overo tails are all dark.

·         Tobianos generally have dark eyes, overos generally have blue eyes.

            And other similar generalizations.  However, these are outdated, are very general tendencies and they really only apply to one of the patterns in the “overo” category - Frame Overo.  As you will see, the others are different, and there are also many exceptions in every pattern.  There is only one characteristic that is uniformly true and that is face white – all of the genes in the “overo” category tend to put white on the face, while tobiano does not put white on the face. 

            Many years ago, overo was thought to be recessive.  This was mainly because of what were called “cropouts”, where a loud body-spotted foal was born to two parents with “regular markings”.  At the time, the Quarter Horse registry (among others) would not register horses with white body spots, so the QH “cropouts” were registered as Paints.  Other breeds were not so lucky, although most of those denied registration in their breed registry would be accepted into the Pinto registry.  The vast majority of “cropouts” are in the “overo” category.  You will recall last time we looked at the so-called “crypto tobiano” where the horse has the gene, but does not display any body spots, so can be mistaken for a non-pinto.  This is quite rare with tobiano, but much more common with the “overo category” genes.  It is not known why this is so.  At any rate, as knowledge grew, and statistics were analyzed, it was understood that it was not recessive; it was just more prone to minimal expression. 

            Within the “Overo” category, there are three main patterns.  These names are based on phenotype (appearance).  Although more and more genes are being found all the time, not all are isolated yet.  The three general sub-categories of “Overo” are:  Frame, Splash, and Sabino.  Within those patterns are varying numbers of actual spotting genes. 

            At this point it is worth mentioning that there are some people who believe that a horse should only be called a specific pattern if it has tested positive for that gene.  This is wrong for many reasons, one being that horse color and pattern names were around long before any of the genes were discovered, and the name of a color does not necessarily correlate with the name of the gene.  Another is that these genes are far from all known.  These pattern names refer to a horse with a specific phenotype, whether or not the causative gene(s) have been found.  But if you spend time on the Internet, especially Facebook, you will undoubtedly run across some of these “know-it-alls” that insist on such things.  Feel free to ignore them. 

 

Frame Overo

            The first pattern is called Frame Overo, or just Frame.  This is the pattern most think of when they hear the term “overo”.  It is also called “Lethal White Overo”, or LWO.  It had been known for many years that breeding overo x overo had the potential to result in what is known as a “lethal-white foal”.  These foals are born all-white (rarely, with a few bits of color) and they do not survive.  This is called LWOS, for “lethal white overo syndrome” (or OLWS, overo lethal white syndrome).  It took some time to figure out, but once it was understood that there are various other kinds of “overos” (thus explaining the fact that lethal-white foals comprise far less than 25% of overo x overo breedings), and that the pattern can be very minimally expressed (thus explaining the occasional lethal-white foal coming from one “solid” parent), then it was only a matter of time and observation before it was well understood that only the Frame Overo pattern was the source of the lethal gene, and that the lethal-white foals were the ones that were homozygous for the gene.  Once the gene was isolated, testing confirmed that. 

            Like all pinto patterns, Frame can range from just a little white to mostly white.  This gene puts white on the face first, often with one or both eyes blue, whether the skin surrounding the eye is white or dark.  It’s not uncommon for the face white to be more extensive on one side than the other.  Body spots tend to start on the side of the neck and barrel, and spread out in a roughly horizontal direction.  The white typically does not cross the back between withers and tail, and the tail is almost always dark.  The chest and back side of hindquarters usually remain dark, hence the name Frame – it’s as if the white parts are “framed” around the edges by dark.  The edges of the white markings are typically not smooth and rounded like some other patterns, nor roany or lacey like some others.  They tend to be rather jagged with a “torn paper” type of look.  Frame does not put any white on the legs (in the absence of another different white-spotting or white-markings gene, of course).  Just as we saw last time that lots of white on the legs combined with a dark face is highly suspect for Tobiano, the reverse is true here – a large amount of face white combined with none on the legs is highly suspect for Frame, especially if the eyes are blue. 

            Keep in mind, all these characteristics are for a horse that is Frame only.  This is not all that common in the Paint and Pinto breeds since there are various other patterns and horses have often been bred for as much “color” (actually, white!) as possible, so many of them have more than one kind of pinto gene. 

Frame Overo examples:

frameov1   tetonka1

 

How it works

            Frame Overo is, like Tobiano, caused by just one gene.  It is an incomplete dominant (you will remember from the discussion about Cream, that this means a gene that has one effect when heterozygous, and another when homozygous).  The gene is called “O”.  So “o/o” would mean a horse with the recessive, normal allele, and “O/o” would be a horse with one copy of Frame Overo, which will result in white spotting (to greater or lesser degree), and “O/O” would be a horse that is homozygous for Frame, and would be a lethal-white foal which is always fatal.  The gene has no harmful effect when heterozygous – only when homozygous.  It is highly recommended that every breeder of Paints and Pintos, as well as other breeds that have Frame in their gene pool, should test every horse before using it for breeding.  This is because the Frame pattern is well known to “hide” on minimally-expressed individuals, or horses that have one or more other spotting patterns as well.  The gene can be expressed so minimally that there is no outward sign of it at all (this is admittedly rare, but losing a foal in this way is tragic for all concerned). 

            The Frame Overo gene was one of the first color genes to be isolated, in 1998.  Unlike other colors where the primary motive was curiosity and preference for one color over another, this one had the urgency of saving lives because of the LWOS issue.  Now that there is a test, it is a simple matter to make sure to never breed two “O/o” horses together.  The gene is on Chromosome 17 at the locus which controls the “Endothelin Receptor b” (EDNRB).  This gene is believed to be a relatively recent mutation in North America.  It does not occur in breeds originating elsewhere. It is fairly widespread across many breeds, though, even some that dislike spots.  This is attributed to its ability to “hide” (be minimally expressed) for even many generations.

            Most testing labs report the results as “O” for the dominant Frame allele, and “N” for the recessive non-Frame allele, rather than using “O” and “o” as genetics terminology would.  They feel that it is easier to understand that way. 

            Because the homozygous Frame Overos all die, you can see from the Punnett Square that breeding two Frame Overos together does not increase your odds of getting a colorful foal any more than breeding Frame to solid.  It is 50% either way.

 

 

 O

N

O

O/O

O/N

N

O/N

N/N

 

O/O = lethal-white (25%);  O/N = Frame Overo (50%);  N/N = solid (25%)

 

 

 

O

N

N

O/N

N/N

N

O/N

N/N

 

O/N = Frame Overo (50%);  N/N = solid (50%)

 

Splash, AKA Splash-White, AKA Splashed White

            Splash was once thought to be rarest of the “overo” patterns.  However, as more was learned about it, it was found to be more widespread than previously thought. 

            The name is thought to have arisen because the general appearance is one of a horse that walked through white paint and it “splashed” up onto him from the bottom up.  Additionally, it tends to look as though the horse dunked its head right into a bucket of white paint.  The edges of the white spots tend to be fairly smooth, like the Tobiano, when no other patterns are present. 

            The “classic” or “typical” Splash pattern is actually caused when the horse is homozygous for the Splash gene.  This description refers to that phenotype.

            The white starts on the legs and head, and spreads up onto the belly and sides.  White forelegs up over the knee level, with a horizontal edge, is common for this pattern and not others.  The hind leg white will generally run up the front of the leg.   The face is generally all or mostly white, with the white commonly ending in a smooth horizontal line about where a browband would rest.  The eyes are usually blue, and there is very often a ring of dark “eyeliner” around them.  This is unique to this pattern.  The tip of the tail is often white.  This is also very unusual on any other pattern (tobianos with two-toned tails typically have white at the top and color at the bottom).

            One interesting thing about Splash is that they are often deaf.  Deafness has not been associated with any other horse color.  In other animals, white coats and blue eyes are commonly associated with deafness.  It may be that Splash works in a similar manner, but not all of them are deaf.  It doesn’t seem to matter whether the ears are white or not, or whether the horse is heterozygous or homozygous for Splash, but it does tend to run in families.  If neither parent is deaf, it appears the foal is very unlikely to be deaf, no matter how much white it gets. 

 

How it works

            Splash is another incomplete dominant, like Frame and Cream.  When homozygous, it produces the “classic” example of the Splash pattern, as described above.  But when heterozygous, it is far less expressed.  The appearance of a heterozygous Splash with lots of white, and a homozygous Splash with little white, overlaps to some degree.  But a horse with large body spots is surely homozygous, and heterozygous ones can appear to be a solid horse.  This is undoubtedly one of the reasons that “overo” was thought to be recessive at one time, and why Splash was thought to be relatively rare.  In breeds which do have Splash in their gene pool, but do not accept “pintos”, meaning white spots on the body, these “pintos” would occasionally appear from two “solid” parents.  Once the nature of Splash was understood (that it was an incomplete dominant), this made perfect sense.  The heterozygous ones just didn’t look like a Splash (or a pinto, for that matter).

            When heterozygous, Splash can have quite a bit of face and leg white, but it can also have very little.  They may or may not have blue eyes.  If the white covers the eyes and the eyes are blue, they often have the “eyeliner”, but not always.  They may or may not have the white tail tip.  There is usually no body white, aside from perhaps a little on the underside of the belly.  Horses with one Splash gene can be expressed very minimally, just like Frame, thus allowing it to “hide”. 

            In 2012 researchers set out to find the Splash gene, and came up with a surprise.  They actually found more than one gene that causes the Splash phenotype.  (There are also horses out there with the classic Splash pattern, but testing negative for the known genes, so it is expected they will find more.)   Horses with the pattern are still all called “Splash”, but if it is known through testing which gene they have, it can be specified. 

            Even more surprisingly, the mutations were found at two different gene locuses.  The first one, named SW1, is located at the MITF gene on chromosome 16.  It is widespread in many breeds around the world, so has been around for quite some time.  It is by far the most common one, and it behaves as described above. 

            The second gene, called SW2, is located at the PAX3 gene on chromosome 6.  The researchers believe that this mutation occurred in a Quarter Horse mare foaled in 1987 named Katie Gun.  All of the horses testing positive for this mutation are descended from her.  They did not find any horses homozygous for SW2, and speculate, based on the way a similar gene works in mice, that it may be an embryonic lethal.  (Time will tell.  A mare that is only 30 years old is unlikely to be doubled up in pedigrees yet.)  Horses with this gene appear very similar to those with one copy of SW1, perhaps somewhat more likely to be fairly minimally expressed, and are often deaf.

            Horses which have both SW1 and SW2 do not appear to have large amounts of body spotting like the SW1/SW1 do.  The ones observed so far look not much different from a heterozygous SW1 with a good deal of white.

            A different mutation was identified at the MITF locus and named SW3.  Not much information was given about this gene, but they called it “extremely rare” and suggest that it too may be embryonic lethal when homozygous.  One photo was shown of a horse with this gene, which appears to have a fairly normal Splash-type phenotype, and a foal of that horse which has both SW1 and SW3, and is all white.

 

Macchiato

            An oddly marked Franches-Montagnes horse was born in 2008 to two solid parents.  His pattern looks more like what would fall under the “sabino” category, but he also has an odd pigment dilution, and is deaf.  The mutation which occurred in this horse to cause his pattern was unknown at the time, and was named “Macchiato”.  The researchers discovered he had a unique mutation at the MITF locus. Technically that would make him a type of Splash, although researchers declined to name this SW4, perhaps in deference to what his breeders were already calling the color.

 

“Macchiato”

 

 

            Additional research later found one more Splash mutation at the PAX3 locus, which is described thus far only as “a very rare form of splash white found in Appaloosas”.  More info will be added when it is published. 

 

 

Sabino

            Sabino” is now a phenotype term, not a genetic term, just like “overo”.  At one time it was thought to be one gene, but as the widely varying types of expression mounted up, and genetic testing in mice discovered dozens of different genes causing similar-looking white spotting, it became obvious that this category would be a large one indeed, and so it has turned out.  We now know there are many different mutations causing the sabino patterns, all (so far) at the same locus. 

            The basic sabino appearance is a horse with white starting on the legs and face, and spreading to the belly, flanks, and further in some cases, up to and including all white.  The edges of the white spots are usually lacy or roany, sometimes with extensive roaning.  The eyes are usually dark, no matter how much white the horse has.  (Blue eyes have been known to pop up randomly in some lines.)  The more minimal expression would be a horse with “lots of chrome”, blaze and stockings, with jagged or lacey or roany edges, and perhaps a little belly spot.  A louder one would have more face white, stockings extending above the knees/hocks (typically running up the back of front legs and the front of back legs), more white on the belly, and perhaps more roaning around the flanks, chest, and belly.  Really loud ones will have wild spatters and splotches of white on the body, and some may have roaning all over.  And maximally expressed ones will be nearly all white, with varying amounts of small dark speckles, perhaps a “medicine hat” marking (base color only covering the ears and surrounding skin, like a hat).  Some are heavily roaned all over, and these have been called “sabino-roans”. 

            When you think of sabino, think of Clydesdales.  They are almost all sabino.  Most have big blazes and stockings, many have belly spots, some have extensive roaning (in fact many are registered as “roan” although true Roan does not exist in the breed), and a few are all or nearly all white.  The gene causing the sabino pattern in this breed has not been isolated yet. 

            These patterns are present in nearly every breed of horse except for a few that have strongly selected for minimal or no white markings for many years.  Like the other “overo” category patterns, they can be expressed so minimally as to appear solid, or “just ordinary markings”, and then be expressed much more in the offspring, leading to “surprise” pinto foals.  At this time there is no effective way to draw a line between “regular markings” and “minimal sabino type markings”.  As more and more gene variations are found, we may someday know for sure which horses with “lots of chrome” have the genetic potential to produce loudly-spotted or even all-white foals, and which will never go beyond a certain point.  But that does not look likely any time soon.

 

How it works

            In 2005, a gene was found in the “KIT” complex on chromosome 3, which causes a sabino phenotype, and it was named Sb1.  Not all sabino-patterned horses had this gene, and the researchers fully expected there would be more genes found.  But there’s a twist in the tale, which we will get to in a moment.

            Sb1 is another incomplete dominant, but with quite a lot of variability.   The heterozygous horses typically have lots of leg and face white, lots of roaning, maybe a belly spot.  The homozygous ones are typically all or mostly white.  The gene is widespread but only in a limited number of breeds.  Note that although the homozygous horses are (more or less) all white, there are no health issues associated with the color in this case – unlike the LWO homozygous Frame. 

            Meanwhile, a couple years after Sb1 was found, a different lab was searching for mutations in the same exact gene – the “KIT” complex – in horses that were all white or nearly so.  They found four different mutations that consistently caused a white phenotype when only one copy of the gene was present (unlike two copies with Sb1) and they chose to name these “W” for “White”, 1 through 4.  At the time they used the name “Dominant White”.  Dominant, because it was a simple dominant, only needing one copy of the gene to have the effect, and White, because the horse was usually all or nearly all white when they had it. 

            However, this created a headache for horse color genetics researchers.  To understand why, it’s necessary to look into the past for a moment.  We have touched on the fact that before any genes were actually isolated, horse color gene theories came and went as observational and breeding studies proved or disproved them, and a starting point was often known color genes in other species, especially mice, which have been more thoroughly studied.  There is a gene in some other species called Dominant White, “W”, which is entirely epistatic to all other colors, and creates a pure white individual when one copy is present, and is a homozygous lethal.  This was thought to exist in horses, and books through the 70s and 80s state it as fact.  A study was done in the 60s that was claimed to prove its existence.  (However, with hindsight, we now know that the study had some serious issues and really didn’t prove anything.)  When a pure white horse would pop up in various breeds, it would be labeled as a “Dominant White” without regard for the most obvious fact of all about a dominant gene – that one parent must have it in order for the foal to have it.  And these white horses came from two non-white parents…. but often from at least one parent with “lots of chrome” or a loud sabino type pattern.  Through the 90s horse color researchers came to the conclusion that there was no true “White” gene in horses – just as there is no true albino in horses – because they do not produce as such a gene would, i.e. 50% pure white foals and 50% solid dark foals.  Instead they produce varying amounts of splashy white pintos, solids, and occasionally whites, and the all-white ones usually have at least some, and often quite a lot, of residual color, as patches of color or speckles of dark skin.  The old “Dominant White” label was dropped, since the gene of that name in other species is not the same as what we find in horses.  The term “maximum sabino” became preferred, even after Sb1 was found, and with it the knowledge that there was more than one gene out there causing the sabino patterns.  It was important to use a different term so that people would understand that this is not “a gene that makes the animal pure white” but rather a “white spotting gene that can sometimes cover the whole horse with one big white spot”.  A subtle difference perhaps, but important. 

            So the horse color genetics community was widely disappointed that the researchers chose to resurrect that old term and call these new mutations “Dominant White”.  But they were apparently unaware of the controversy, and the first few mutations they found did result in a mostly-white horse most of the time, when they had one copy of the gene. 

            A couple years later, several more unique mutations had been found in the same “KIT” complex and had been labeled W5 through W11, but now the name was beginning to be a problem, because some of these mutations caused all-white phenotypes and some didn’t.  Most were varying levels of sabino-roan or sabino-spotted phenotypes.  Some produced white coats frequently, some occasionally, some never.  The old “Dominant White” label was not working, so it was discarded without fanfare and replaced with “White Spotting” as the name for the W series genes.  Most horse color experts believe they should have gone back to the “Sb” label for the clearly sabino type markings, but for whatever reason that did not happen and they just kept adding numbers and calling them W. 

            The 20th such gene to be isolated, named W20, was perhaps the catalyst for the name change.  This gene does not fit into the “Dominant White” category at all, for it does not cause all-white on its own, nor even body spots or roaning, but rather more like “ordinary white markings” on face and legs.  It also can be homozygous with no problem (some of the other W mutations are theorized to be homozygous lethal).  By itself, it does not seem to do much, but when combined with another of the W mutations, it seems to boost the pattern.  There are all-white horses which are both W5 and W20, or W20 and W22.

            All this genetic discovery has shown us that the “KIT” locus is a very large, very unstable one, which apparently is quite prone to mutations, and mutations here appear to (so far anyway) only affect the horse’s pigmentation, with no ill effects elsewhere.  Most of those found so far are fairly recent, with the “founder” (horse it first occurred in) known.  W20 is the only one so far that is very widespread and probably quite old (another reason most experts feel it should have been named Sb2 and not W, but it’s the discoverer’s choice what to name a gene).  Many of the others can be traced back to a specific horse, which was born white or near-white or loudly spotted, from solid parents.  It’s also a very large locus, so a horse can actually carry more than just two mutations.  At least one has already been tested that is homozygous for W20 and heterozygous for W22.  This means that the two mutations are located far enough apart that they don’t “occupy the same address”.  This is unusual.  There are still plenty of sabino-type patterned horses out there that test negative for all the currently known spotting genes, so we fully expect that more will be found. 

 

Face White

            As mentioned, the one characteristic that all of the “overo” genes have in common that Tobiano does not, is face white.  The three general sub-categories of overo patterns all put white on the face to some degree, but they vary in the appearance of that white.  It’s interesting to compare and contrast them.  Of course, they vary a lot, and can be very minimal, but when considering each pattern separately at a moderate degree of expression, they do show different tendencies.  Splash tends to have a smooth line across the forehead, tends to go right over the eyes, and blue eyes with “eyeliner” are common.  Frame tends to go down the side of the face between eyes and nose, and blue eyes are common even if surrounded by dark skin.  Sabino tends to wrap around under the jaw, seems to avoid the eyes, which are almost always dark, and is usually jagged or lacy.

                                                                                                           sabinohead                    Frameface                                splashface1

                                                                                                                      Sabino face                                       Frame face                                                  Splash face

 

Manchado

            In addition to the general categories of Frame, Splash, and Sabino, there is one more unique and rare pattern.  It does not fit neatly into any of these categories and the genetic mechanism is unknown, but it is generally considered to fall under the “overo” umbrella since that just means “anything not tobiano”.  This pattern is called Manchado.  It is unlike any other pattern.  The white tends to start along the topline and spread down, more like tobiano.  They typically have round or oval spots of color within the white areas, which can resemble appaloosa spotting more so than pinto spotting at times.  The pattern itself does not appear to put white on either the face or legs (they seem to have only “ordinary markings” such as star, blaze, socks, etc.) but it very often does put white on the tailhead (the whole tail may be white) and most oddly, on the ears and forelock area, which is generally the last place all the other pinto spotting genes spread to.  This pattern has only been found in Argentina, although in various breeds, and it is so rare and sporadic that it is thought to be recessive, or possibly even have an environmental factor. 

            There is an interesting article about the subject here:   http://equinetapestry.com/2011/06/speculation-about-the-environmental-nature-of-manchado/

 

 

 

Combining Pinto Genes

            One of the most interesting things about the pinto pattern genes is that they are located in different places, so they can occur in combination.  A horse could carry as many as half a dozen different pinto genes.  Since the patterns tend to put white on somewhat different parts of the body in many cases, a horse with multiple different spotting genes will tend to have more white on its body.  The name given to a horse with at least one Tobiano gene and any one or more of the overo category genes is “Tovero” (or some call it “Tob-Overo”).  This name was invented by the registries – both Paint and Pinto began using it about the same time – and since the genes were unknown at the time, these registries really only use the term for a really obvious example.  A tobiano-patterned horse with a white face, for example.  If you had a tobiano looking horse who was known by testing to also carry an “O” gene, but did not outwardly show it (just a small blaze, say) the registry would not call it Tovero.  In other words, it’s a phenotype term, not a genetic term.  

 

SACRED INDIAN (APHA)

The only colored hairs on this stallion are the dark hairs around his ears.  He is homozygous for Tobiano and also has one copy of the Frame Overo gene.  He likely carries other spotting genes as well.

 

            It is not just possible, but likely, that many “overo” horses have more than one gene creating their patterns.  Here is an example of a Paint stallion that has one copy each of Frame and Splash (SW1), as well as at least one sabino type pattern gene.  You can see the different characteristics of each on his body, and he has sired foals with only one, or two (in various combinations), or all three patterns.  It’s not always possible to tell by looking, but if a horse has enough offspring, it can be sorted out which patterns he has.  This stallion sired over 100 foals, many from solid mares, so it became obvious over time that he had all three patterns. 

                                                                                                              Whiskey L                                 Whiskey R

 

 

            From a color breeder’s point of view, intriguing statistics are derived from horses carrying more than one different pinto gene. A horse carrying two separate pinto genes should produce a pinto offspring 75% of the time from solid mates. A horse having three independent pinto genes should produce a pinto foal 87.5 % of the time from solid mates.  For the horse carrying four different genes, the percentage of pinto foals from solid partners hits an amazing 94%.  Adding one or more pinto genes in the other parent, and you could be nearly guaranteed of getting at least one pinto gene in your foal, even if neither parent is homozygous for anything. (Of course, when it comes to the “overo” category genes, just having one copy of one gene is no guarantee of getting a “pinto”, meaning a horse with white spots on the body.  As we have seen, these can be surprisingly minimal in expression.)

            The problem is that multiple copies of pinto genes often produces more white on horses.  This can include mostly to all white.  And a horse that is all white, even though this is caused by pinto genes, is considered “solid” by the Paint registry.  This is something to be avoided in most breeders’ opinion (horses registered as “solid” have fewer opportunities in the show ring).  Additionally, many people do not like white horses.  They are hard to keep clean, and may have issues with sunburn.  Pink skin around the eyes is more prone to developing skin cancer.  When breeding pintos, though, it’s pretty much impossible to predict the outcome.  So, if a person really wanted an all-white horse, or really wanted one that’s mostly dark but with a few colorful spots, they would be well advised to go out and buy one that they like, rather than trying to breed for it.